#rna-sequence

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OMG science
fromNature
2 days ago

The air is full of DNA - here's what scientists are using it for

Airborne DNA is a new frontier for studying ecosystems, monitoring species, and assessing conservation efforts.
Artificial intelligence
fromFast Company
3 days ago

AI is rewriting the rules of biological experiments, but safety regulations aren't keeping up

AI is autonomously designing and running biological experiments, outpacing current governance systems meant to regulate these capabilities.
Medicine
fromNature
1 week ago

Saturation editing of RNU4-2 reveals distinct dominant and recessive disorders - Nature

De novo variants in RNU4-2 cause ReNU syndrome, a neurodevelopmental disorder characterized by developmental delays and other severe symptoms.
Science
fromNature
4 weeks ago

Synthetic circuits for cell ratio control - Nature

Synthetic biology enables artificial cell differentiation and division of labor by engineering genetic and epigenetic circuits that mimic natural stem cell asymmetric division processes.
Science
fromwww.nature.com
1 month ago

Molecular basis of oocyte cytoplasmic lattice assembly

Cryo-EM reveals the cytoplasmic lattice in mammalian oocytes comprises repeating U-shaped basket and adapter ring units with 14 protein subunits, essential for oocyte maturation and embryonic development.
fromNews Center
2 months ago

AI Model May Improve RNA Sequencing Research - News Center

Scientists in the laboratory of Rendong Yang, PhD, associate professor of Urology, have developed a new large language model that can interpret transcriptomic data in cancer cell lines more accurately than conventional approaches, as detailed in a recent study published in Nature Communications. Long-read RNA sequencing technologies have transformed transcriptomics research by detecting complex RNA splicing and gene fusion events that have often been missed by conventional short-read RNA-sequencing methods.
Cancer
fromwww.nature.com
1 month ago

Genetically encoded assembly recorder temporally resolves cellular history

GEMINI leverages a computationally designed protein assembly as an intracellular memory device to record the history of individual cells. GEMINI grows predictably within live cells, capturing cellular events as tree-ring-like fluorescent patterns for imaging-based retrospective readout. Absolute chronological information of activity histories is attainable with hour-level accuracy.
OMG science
fromNature
1 month ago

Why 'quantum proteins' could be the next big thing in biology

Fluorescent proteins from crystal jellyfish are being transformed into quantum bits to create highly sensitive quantum sensors for biological applications.
Science
fromArs Technica
1 month ago

Large genome model: Open source AI trained on trillions of bases

Evo 2, an AI system trained on trillions of base pairs from all life domains, can identify genes, regulatory sequences, and splice sites in complex genomes including humans.
Science
fromNature
1 month ago

DICER cleavage fidelity is governed by 5-end binding pockets - Nature

DICER is a conserved RNase III enzyme that processes precursor microRNAs and double-stranded RNAs into small regulatory RNAs through precise 5' and 3' end counting mechanisms.
Medicine
fromwww.nature.com
2 months ago

Pre-incision structures reveal principles of DNA nucleotide excision repair

Nucleotide excision repair removes bulky DNA lesions via coordinated recognition, verification, excision, and resynthesis to maintain genome stability and prevent cancer and premature ageing.
OMG science
fromNature
2 months ago

Regulatory grammar in human promoters uncovered by MPRA-based deep learning - Nature

Massively parallel reporter assays provide cell-type-specific causal training data enabling more direct inference of DNA sequence effects on promoter activity than epigenomic maps.
Science
fromwww.nature.com
2 months ago

Scalable and multiplexed recorders of gene regulation dynamics across weeks

CytoTape enables multiplexed, genetically encoded, spatiotemporally scalable recording of gene regulation dynamics in single cells for up to three weeks with minute-scale resolution.
Science
fromNature
2 months ago

Construction of complex and diverse DNA sequences using DNA three-way junctions - Nature

DNA writing remains limited by short oligo synthesis and two-way junction assembly methods, hindering affordable, scalable construction of large, complex synthetic DNA.
fromArs Technica
1 month ago

Have we leapt into commercial genetic testing without understanding it?

Martschenko's argument is largely that genetic research and data have almost always been used thus far as a justification to further entrench extant social inequalities. But we know the solutions to many of the injustices in our world-trying to lift people out of poverty, for example-and we certainly don't need more genetic research to implement them. Trejo's point is largely that more information is generally better than less.
Science
Science
fromArs Technica
2 months ago

Tiny, 45 base long RNA can make copies of itself

A 45-base RNA ribozyme can self-replicate, supporting RNA-based origin-of-life scenarios where RNA carried both genetic information and catalytic functions.
Science
fromwww.nature.com
2 months ago

Author Correction: Cotranslational assembly of protein complexes in eukaryotes revealed by ribosome profiling

Extended Data Fig. 4d duplicated Fig. 2a and strains were partially misannotated; corrected figures are provided and do not change study results or conclusions.
Science
fromwww.scientificamerican.com
2 months ago

Google DeepMind unleashes new AI to investigate DNA's dark matter'

AlphaGenome predicts functional effects of mutations in long noncoding DNA sequences up to one million base pairs, helping interpret genomic variants for disease research.
Science
fromNews Center
2 months ago

New Underlying Mechanisms May Support Proper Transcriptional Regulation and Improve - News Center

New mechanisms controlling transcription initiation and elongation involving BET family proteins were identified, revealing pathways that could enable improved targeted therapies for diseases including cancer.
Science
fromNature
2 months ago

'Remote controlled' proteins illuminate living cells

Engineered magnetically sensitive fluorescent proteins enable remote modulation of brightness in cells and animals, offering quantum-based control for biosensors and potential therapies.
fromNature
1 month ago

AI tools can design genomes. Will they upend how life evolves?

Biology is undergoing a transformation. After centuries of studying life as it evolves naturally, researchers are now using a combination of computation and genome engineering to intervene, generating new proteins and even whole bacteria from scratch. The use of artificial-intelligence tools to design biological components, an approach known as generative biology, is set to turbocharge this area of research. Just last year, scientists used AI-assisted design to produce artificial genes that can be expressed in mammalian cells.
Science
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